Characterization of 2,4-Diamino-6-oxo-1,6-dihydropyrimidin-5-yl Ureido Based Inhibitors of Trypanosoma brucei FolD and Testing for Antiparasitic Activity

J Med Chem. 2015 Oct 22;58(20):7938-48. doi: 10.1021/acs.jmedchem.5b00687. Epub 2015 Sep 16.

Abstract

The bifunctional enzyme N(5),N(10)-methylenetetrahydrofolate dehydrogenase/cyclo hydrolase (FolD) is essential for growth in Trypanosomatidae. We sought to develop inhibitors of Trypanosoma brucei FolD (TbFolD) as potential antiparasitic agents. Compound 2 was synthesized, and the molecular structure was unequivocally assigned through X-ray crystallography of the intermediate compound 3. Compound 2 showed an IC50 of 2.2 μM, against TbFolD and displayed antiparasitic activity against T. brucei (IC50 49 μM). Using compound 2, we were able to obtain the first X-ray structure of TbFolD in the presence of NADP(+) and the inhibitor, which then guided the rational design of a new series of potent TbFolD inhibitors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Crystallography, X-Ray
  • Drug Design
  • Enzyme Inhibitors / chemical synthesis
  • Enzyme Inhibitors / pharmacology
  • Enzyme Inhibitors / therapeutic use
  • Humans
  • Leukemia / drug therapy
  • Macrophages / drug effects
  • Methylenetetrahydrofolate Dehydrogenase (NADP) / antagonists & inhibitors
  • Methylenetetrahydrofolate Dehydrogenase (NADP) / chemistry
  • Methylenetetrahydrofolate Dehydrogenase (NADP) / metabolism
  • Models, Molecular
  • Phenylurea Compounds / chemical synthesis*
  • Phenylurea Compounds / pharmacology*
  • Pyrimidinones / chemical synthesis*
  • Pyrimidinones / pharmacology*
  • Structure-Activity Relationship
  • Trypanocidal Agents / chemical synthesis*
  • Trypanocidal Agents / pharmacology*
  • Trypanosoma brucei brucei / drug effects*
  • Trypanosoma brucei brucei / enzymology
  • Trypanosoma brucei brucei / growth & development
  • Trypanosomiasis, African / drug therapy
  • Trypanosomiasis, African / parasitology

Substances

  • Enzyme Inhibitors
  • Phenylurea Compounds
  • Pyrimidinones
  • Trypanocidal Agents
  • Methylenetetrahydrofolate Dehydrogenase (NADP)

Associated data

  • PDB/4LRR